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<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>Hi Marco & Carl,</span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> </span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>I’ve attached two files showing the same diagram –
one PNG, one DIA file that I created the PNG from. Hopefully this will
give you a clearer idea of the current form of the database</span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> </span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>I think there are two main questions I have about it right
now. The first is whether to store numerical data with the rest of the gantt
chart in a series of columns of the form (window-start-n, window-end-n,
window-numerical-n. . .). The plus side of this is that the data is
readily available and can easily be added into any scoring method during the pairwise
alignment. The minus is that the table is really hideous to look at and
there may be much more in it than is normally needed. With either method,
I have yet to come up with a really great way to insert data, since there is
not a uniform # of windows. I thought I figured it out, but it didn’t
work well with common sql.</span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> </span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>The other main question is whether individual time points of
the datasets should be stored and annotated individually, or if the data should
be stored in one file (I’m assuming just stored non-windowed data in
files and then gantt chart form data, with nothing else in between).</span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> </span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>Samantha</span></font></p>
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