From mantoniotti at common-lisp.net Tue May 10 17:42:57 2005 From: mantoniotti at common-lisp.net (Marco Antoniotti) Date: Tue, 10 May 2005 19:42:57 +0200 (CEST) Subject: [cl-sbml-cvs] CVS update: Module imported: cl-sbml Message-ID: <20050510174257.69170880A4@common-lisp.net> Update of /project/cl-sbml/cvsroot/cl-sbml In directory common-lisp.net:/tmp/cvs-serv26077 Log Message: Initial import. 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cl-sbml/tests/.svn/text-base/Metabolism-2002Lam.xml.svn-base N cl-sbml/tests/.svn/text-base/CellCycle-1997Nov.xml.svn-base N cl-sbml/tests/.svn/text-base/CellCycle-1991Tys-2.xml.svn-base N cl-sbml/tests/.svn/prop-base/100Yeast.xml.gz.svn-base N cl-sbml/tests/.svn/prop-base/100Yeast.xml.svn-base N cl-sbml/tests/.svn/prop-base/Metabolism-2002Lam.xml.svn-base N cl-sbml/tests/.svn/prop-base/CellCycle-1997Nov.xml.svn-base N cl-sbml/tests/.svn/prop-base/CellCycle-1991Tys-2.xml.svn-base N cl-sbml/tests/.svn/props/100Yeast.xml.gz.svn-work N cl-sbml/tests/.svn/props/100Yeast.xml.svn-work N cl-sbml/tests/.svn/props/Metabolism-2002Lam.xml.svn-work N cl-sbml/tests/.svn/props/CellCycle-1997Nov.xml.svn-work N cl-sbml/tests/.svn/props/CellCycle-1991Tys-2.xml.svn-work U cl-sbml/cl-mathml/cl-mathml.system U cl-sbml/cl-mathml/math.lisp U cl-sbml/cl-mathml/cl-mathml-package.lisp U cl-sbml/cl-mathml/mathml-parser.lisp U cl-sbml/cl-mathml/mathml-writer.lisp N cl-sbml/cl-mathml/.svn/entries N cl-sbml/cl-mathml/.svn/empty-file N cl-sbml/cl-mathml/.svn/README.txt N cl-sbml/cl-mathml/.svn/format N cl-sbml/cl-mathml/.svn/dir-props N cl-sbml/cl-mathml/.svn/dir-prop-base N cl-sbml/cl-mathml/.svn/text-base/math.lisp.svn-base N cl-sbml/cl-mathml/.svn/text-base/cl-mathml.system.svn-base N cl-sbml/cl-mathml/.svn/text-base/mathml-parser.lisp.svn-base N cl-sbml/cl-mathml/.svn/text-base/mathml-writer.lisp.svn-base N cl-sbml/cl-mathml/.svn/text-base/cl-mathml-package.lisp.svn-base N cl-sbml/cl-mathml/.svn/prop-base/math.lisp.svn-base N cl-sbml/cl-mathml/.svn/prop-base/cl-mathml.system.svn-base N cl-sbml/cl-mathml/.svn/prop-base/mathml-parser.lisp.svn-base N cl-sbml/cl-mathml/.svn/prop-base/mathml-writer.lisp.svn-base N cl-sbml/cl-mathml/.svn/prop-base/cl-mathml-package.lisp.svn-base N cl-sbml/cl-mathml/.svn/props/math.lisp.svn-work N cl-sbml/cl-mathml/.svn/props/cl-mathml.system.svn-work N cl-sbml/cl-mathml/.svn/props/mathml-parser.lisp.svn-work N cl-sbml/cl-mathml/.svn/props/mathml-writer.lisp.svn-work N cl-sbml/cl-mathml/.svn/props/cl-mathml-package.lisp.svn-work 4 conflicts created by this import. Use the following command to help the merge: cvs checkout -jcl-sbml:yesterday -jcl-sbml cl-sbml Date: Tue May 10 19:42:56 2005 Author: mantoniotti New module cl-sbml added From mantoniotti at common-lisp.net Thu May 12 17:02:58 2005 From: mantoniotti at common-lisp.net (Marco Antoniotti) Date: Thu, 12 May 2005 19:02:58 +0200 (CEST) Subject: [cl-sbml-cvs] CVS update: Module imported: cl-sbml Message-ID: <20050512170258.EA8FB8870E@common-lisp.net> Update of /project/cl-sbml/cvsroot/cl-sbml In directory common-lisp.net:/tmp/cvs-serv3000 Log Message: Initial import. Directory structure created. Status: Vendor Tag: cl-sbml Release Tags: start No conflicts created by this import Date: Thu May 12 19:02:58 2005 Author: mantoniotti New module cl-sbml added From mantoniotti at common-lisp.net Thu May 12 17:11:06 2005 From: mantoniotti at common-lisp.net (Marco Antoniotti) Date: Thu, 12 May 2005 19:11:06 +0200 (CEST) Subject: [cl-sbml-cvs] CVS update: Directory change: cl-sbml/docs Message-ID: <20050512171106.0AA448870E@common-lisp.net> Update of /project/cl-sbml/cvsroot/cl-sbml/docs In directory common-lisp.net:/tmp/cvs-serv3086/docs Log Message: Directory /project/cl-sbml/cvsroot/cl-sbml/docs added to the repository Date: Thu May 12 19:11:05 2005 Author: mantoniotti New directory cl-sbml/docs added From mantoniotti at common-lisp.net Thu May 12 17:11:06 2005 From: mantoniotti at common-lisp.net (Marco Antoniotti) Date: Thu, 12 May 2005 19:11:06 +0200 (CEST) Subject: [cl-sbml-cvs] CVS update: Directory change: cl-sbml/tests Message-ID: <20050512171106.1DAC688735@common-lisp.net> Update of /project/cl-sbml/cvsroot/cl-sbml/tests In directory common-lisp.net:/tmp/cvs-serv3086/tests Log Message: Directory /project/cl-sbml/cvsroot/cl-sbml/tests added to the repository Date: Thu May 12 19:11:06 2005 Author: mantoniotti New directory cl-sbml/tests added From mantoniotti at common-lisp.net Thu May 12 17:11:07 2005 From: mantoniotti at common-lisp.net (Marco Antoniotti) Date: Thu, 12 May 2005 19:11:07 +0200 (CEST) Subject: [cl-sbml-cvs] CVS update: Directory change: cl-sbml/cl-mathml Message-ID: <20050512171107.303668873E@common-lisp.net> Update of /project/cl-sbml/cvsroot/cl-sbml/cl-mathml In directory common-lisp.net:/tmp/cvs-serv3086/cl-mathml Log Message: Directory /project/cl-sbml/cvsroot/cl-sbml/cl-mathml added to the repository Date: Thu May 12 19:11:06 2005 Author: mantoniotti New directory cl-sbml/cl-mathml added From mantoniotti at common-lisp.net Thu May 12 17:11:07 2005 From: mantoniotti at common-lisp.net (Marco Antoniotti) Date: Thu, 12 May 2005 19:11:07 +0200 (CEST) Subject: [cl-sbml-cvs] CVS update: Directory change: cl-sbml/cl-xml-ext Message-ID: <20050512171107.3D27388742@common-lisp.net> Update of /project/cl-sbml/cvsroot/cl-sbml/cl-xml-ext In directory common-lisp.net:/tmp/cvs-serv3086/cl-xml-ext Log Message: Directory /project/cl-sbml/cvsroot/cl-sbml/cl-xml-ext added to the repository Date: Thu May 12 19:11:07 2005 Author: mantoniotti New directory cl-sbml/cl-xml-ext added From mantoniotti at common-lisp.net Thu May 12 17:16:49 2005 From: mantoniotti at common-lisp.net (Marco Antoniotti) Date: Thu, 12 May 2005 19:16:49 +0200 (CEST) Subject: [cl-sbml-cvs] CVS update: Directory change: cl-sbml/docs/html Message-ID: <20050512171649.507E18870E@common-lisp.net> Update of /project/cl-sbml/cvsroot/cl-sbml/docs/html In directory common-lisp.net:/tmp/cvs-serv3976/html Log Message: Directory /project/cl-sbml/cvsroot/cl-sbml/docs/html added to the repository Date: Thu May 12 19:16:48 2005 Author: mantoniotti New directory cl-sbml/docs/html added From mantoniotti at common-lisp.net Thu May 12 17:17:46 2005 From: mantoniotti at common-lisp.net (Marco Antoniotti) Date: Thu, 12 May 2005 19:17:46 +0200 (CEST) Subject: [cl-sbml-cvs] CVS update: Directory change: cl-sbml/docs/html/images Message-ID: <20050512171746.8945488735@common-lisp.net> Update of /project/cl-sbml/cvsroot/cl-sbml/docs/html/images In directory common-lisp.net:/tmp/cvs-serv3993/images Log Message: Directory /project/cl-sbml/cvsroot/cl-sbml/docs/html/images added to the repository Date: Thu May 12 19:17:46 2005 Author: mantoniotti New directory cl-sbml/docs/html/images added From mantoniotti at common-lisp.net Thu May 12 17:17:46 2005 From: mantoniotti at common-lisp.net (Marco Antoniotti) Date: Thu, 12 May 2005 19:17:46 +0200 (CEST) Subject: [cl-sbml-cvs] CVS update: Directory change: cl-sbml/docs/html/dictionary Message-ID: <20050512171746.8301A8870E@common-lisp.net> Update of /project/cl-sbml/cvsroot/cl-sbml/docs/html/dictionary In directory common-lisp.net:/tmp/cvs-serv3993/dictionary Log Message: Directory /project/cl-sbml/cvsroot/cl-sbml/docs/html/dictionary added to the repository Date: Thu May 12 19:17:45 2005 Author: mantoniotti New directory cl-sbml/docs/html/dictionary added From mantoniotti at common-lisp.net Thu May 12 17:21:37 2005 From: mantoniotti at common-lisp.net (Marco Antoniotti) Date: Thu, 12 May 2005 19:21:37 +0200 (CEST) Subject: [cl-sbml-cvs] CVS update: cl-sbml/COPYING cl-sbml/INSTALL cl-sbml/README cl-sbml/algebraic-rule.lisp cl-sbml/assignment-rule.lisp cl-sbml/build-model.lisp cl-sbml/cl-sbml-package.lisp cl-sbml/cl-sbml.system cl-sbml/compartment.lisp cl-sbml/event-assignment.lisp cl-sbml/event.lisp cl-sbml/function-definition.lisp cl-sbml/kinetic-law.lisp cl-sbml/model.lisp cl-sbml/modifier-species-reference.lisp cl-sbml/parameter.lisp cl-sbml/rate-rule.lisp cl-sbml/reaction.lisp cl-sbml/rule.lisp cl-sbml/sbml-base.lisp cl-sbml/sbml-element.lisp cl-sbml/sbml-loader.lisp cl-sbml/sbml-writer.lisp cl-sbml/sbml.lisp cl-sbml/sid.lisp cl-sbml/simple-species-reference.lisp cl-sbml/species-reference.lisp cl-sbml/species.lisp cl-sbml/stoichiometry-math.lisp cl-sbml/unit-definition.lisp cl-sbml/unit-kind.lisp cl-sbml/unit.lisp Message-ID: <20050512172137.1D5A88870E@common-lisp.net> Update of /project/cl-sbml/cvsroot/cl-sbml In directory common-lisp.net:/tmp/cvs-serv4036 Added Files: COPYING INSTALL README algebraic-rule.lisp assignment-rule.lisp build-model.lisp cl-sbml-package.lisp cl-sbml.system compartment.lisp event-assignment.lisp event.lisp function-definition.lisp kinetic-law.lisp model.lisp modifier-species-reference.lisp parameter.lisp rate-rule.lisp reaction.lisp rule.lisp sbml-base.lisp sbml-element.lisp sbml-loader.lisp sbml-writer.lisp sbml.lisp sid.lisp simple-species-reference.lisp species-reference.lisp species.lisp stoichiometry-math.lisp unit-definition.lisp unit-kind.lisp unit.lisp Log Message: Initial manual import of CL-SBML sources and documentation. Date: Thu May 12 19:21:31 2005 Author: mantoniotti From mantoniotti at common-lisp.net Thu May 12 17:21:39 2005 From: mantoniotti at common-lisp.net (Marco Antoniotti) Date: Thu, 12 May 2005 19:21:39 +0200 (CEST) Subject: [cl-sbml-cvs] CVS update: cl-sbml/cl-mathml/cl-mathml-package.lisp cl-sbml/cl-mathml/cl-mathml.system cl-sbml/cl-mathml/math.lisp cl-sbml/cl-mathml/mathml-parser.lisp cl-sbml/cl-mathml/mathml-writer.lisp Message-ID: <20050512172139.282AE8870E@common-lisp.net> Update of /project/cl-sbml/cvsroot/cl-sbml/cl-mathml In directory common-lisp.net:/tmp/cvs-serv4036/cl-mathml Added Files: cl-mathml-package.lisp cl-mathml.system math.lisp mathml-parser.lisp mathml-writer.lisp Log Message: Initial manual import of CL-SBML sources and documentation. Date: Thu May 12 19:21:37 2005 Author: mantoniotti From mantoniotti at common-lisp.net Thu May 12 17:21:42 2005 From: mantoniotti at common-lisp.net (Marco Antoniotti) Date: Thu, 12 May 2005 19:21:42 +0200 (CEST) Subject: [cl-sbml-cvs] CVS update: cl-sbml/docs/usage.txt Message-ID: <20050512172142.BFE1788742@common-lisp.net> Update of /project/cl-sbml/cvsroot/cl-sbml/docs In directory common-lisp.net:/tmp/cvs-serv4036/docs Added Files: usage.txt Log Message: Initial manual import of CL-SBML sources and documentation. Date: Thu May 12 19:21:40 2005 Author: mantoniotti From mantoniotti at common-lisp.net Thu May 12 17:21:40 2005 From: mantoniotti at common-lisp.net (Marco Antoniotti) Date: Thu, 12 May 2005 19:21:40 +0200 (CEST) Subject: [cl-sbml-cvs] CVS update: cl-sbml/cl-xml-ext/cl-xml-ext-package.lisp cl-sbml/cl-xml-ext/cl-xml-ext.lisp cl-sbml/cl-xml-ext/cl-xml-ext.system Message-ID: <20050512172140.679A388735@common-lisp.net> Update of /project/cl-sbml/cvsroot/cl-sbml/cl-xml-ext In directory common-lisp.net:/tmp/cvs-serv4036/cl-xml-ext Added Files: cl-xml-ext-package.lisp cl-xml-ext.lisp cl-xml-ext.system Log Message: Initial manual import of CL-SBML sources and documentation. Date: Thu May 12 19:21:39 2005 Author: mantoniotti From mantoniotti at common-lisp.net Thu May 12 17:21:43 2005 From: mantoniotti at common-lisp.net (Marco Antoniotti) Date: Thu, 12 May 2005 19:21:43 +0200 (CEST) Subject: [cl-sbml-cvs] CVS update: cl-sbml/docs/html/cl-sbml-dictionary.html cl-sbml/docs/html/downloads.html cl-sbml/docs/html/index.html cl-sbml/docs/html/installation.html cl-sbml/docs/html/links.html cl-sbml/docs/html/main.css Message-ID: <20050512172143.CC72488743@common-lisp.net> Update of /project/cl-sbml/cvsroot/cl-sbml/docs/html In directory common-lisp.net:/tmp/cvs-serv4036/docs/html Added Files: cl-sbml-dictionary.html downloads.html index.html installation.html links.html main.css Log Message: Initial manual import of CL-SBML sources and documentation. Date: Thu May 12 19:21:42 2005 Author: mantoniotti From mantoniotti at common-lisp.net Thu May 12 17:21:55 2005 From: mantoniotti at common-lisp.net (Marco Antoniotti) Date: Thu, 12 May 2005 19:21:55 +0200 (CEST) Subject: [cl-sbml-cvs] CVS update: cl-sbml/docs/html/dictionary/algebraic-rule.html cl-sbml/docs/html/dictionary/assignment-rule.html cl-sbml/docs/html/dictionary/build-model-from-sbml.html cl-sbml/docs/html/dictionary/cl-sbml-package.html cl-sbml/docs/html/dictionary/compartment.html cl-sbml/docs/html/dictionary/event-assignment.html cl-sbml/docs/html/dictionary/event.html cl-sbml/docs/html/dictionary/function-definition.html cl-sbml/docs/html/dictionary/kinetic-law.html cl-sbml/docs/html/dictionary/load-sbml.html cl-sbml/docs/html/dictionary/model.html cl-sbml/docs/html/dictionary/modifier-species-reference.html cl-sbml/docs/html/dictionary/parameter.html cl-sbml/docs/html/dictionary/rate-rule.html cl-sbml/docs/html/dictionary/reaction.html cl-sbml/docs/html/dictionary/rule.html cl-sbml/docs/html/dictionary/sbml-base.html cl-sbml/docs/html/dictionary/sbml-element.html cl-sbml/docs/html/dictionary/sbml.html cl-sbml/docs/html/dictionary/sid.html cl-sbml/docs/html/dictionary/simple-species-reference.html cl-sbml/docs/html/dictionary/species-reference.html cl-sbml/docs/html/dictionary/species.html cl-sbml/docs/html/dictionary/stoichiometry-math.html cl-sbml/docs/html/dictionary/unit-definition.html cl-sbml/docs/html/dictionary/unit-kind-p.html cl-sbml/docs/html/dictionary/unit-kind.html cl-sbml/docs/html/dictionary/unit-kinds-constant.html cl-sbml/docs/html/dictionary/unit.html Message-ID: <20050512172155.BE32B88742@common-lisp.net> Update of /project/cl-sbml/cvsroot/cl-sbml/docs/html/dictionary In directory common-lisp.net:/tmp/cvs-serv4036/docs/html/dictionary Added Files: algebraic-rule.html assignment-rule.html build-model-from-sbml.html cl-sbml-package.html compartment.html event-assignment.html event.html function-definition.html kinetic-law.html load-sbml.html model.html modifier-species-reference.html parameter.html rate-rule.html reaction.html rule.html sbml-base.html sbml-element.html sbml.html sid.html simple-species-reference.html species-reference.html species.html stoichiometry-math.html unit-definition.html unit-kind-p.html unit-kind.html unit-kinds-constant.html unit.html Log Message: Initial manual import of CL-SBML sources and documentation. Date: Thu May 12 19:21:45 2005 Author: mantoniotti From mantoniotti at common-lisp.net Thu May 12 17:21:56 2005 From: mantoniotti at common-lisp.net (Marco Antoniotti) Date: Thu, 12 May 2005 19:21:56 +0200 (CEST) Subject: [cl-sbml-cvs] CVS update: cl-sbml/tests/CellCycle-1991Tys-2.xml cl-sbml/tests/CellCycle-1997Nov.xml cl-sbml/tests/Metabolism-2002Lam.xml Message-ID: <20050512172156.0748788743@common-lisp.net> Update of /project/cl-sbml/cvsroot/cl-sbml/tests In directory common-lisp.net:/tmp/cvs-serv4036/tests Added Files: CellCycle-1991Tys-2.xml CellCycle-1997Nov.xml Metabolism-2002Lam.xml Log Message: Initial manual import of CL-SBML sources and documentation. Date: Thu May 12 19:21:56 2005 Author: mantoniotti From mantoniotti at common-lisp.net Thu May 12 17:21:56 2005 From: mantoniotti at common-lisp.net (Marco Antoniotti) Date: Thu, 12 May 2005 19:21:56 +0200 (CEST) Subject: [cl-sbml-cvs] CVS update: cl-sbml/docs/html/images/header_bg.gif cl-sbml/docs/html/images/header_bg_1.gif cl-sbml/docs/html/images/shim.gif Message-ID: <20050512172156.C881288735@common-lisp.net> Update of /project/cl-sbml/cvsroot/cl-sbml/docs/html/images In directory common-lisp.net:/tmp/cvs-serv4036/docs/html/images Added Files: header_bg.gif header_bg_1.gif shim.gif Log Message: Initial manual import of CL-SBML sources and documentation. Date: Thu May 12 19:21:55 2005 Author: mantoniotti From mantoniotti at common-lisp.net Thu May 12 17:29:24 2005 From: mantoniotti at common-lisp.net (Marco Antoniotti) Date: Thu, 12 May 2005 19:29:24 +0200 (CEST) Subject: [cl-sbml-cvs] CVS update: CVSROOT/modules Message-ID: <20050512172924.D96A38870E@common-lisp.net> Update of /project/cl-sbml/cvsroot/CVSROOT In directory common-lisp.net:/tmp/cvs-serv4344 Modified Files: modules Log Message: Added 'html' module. Date: Thu May 12 19:29:24 2005 Author: mantoniotti Index: CVSROOT/modules diff -u CVSROOT/modules:1.1 CVSROOT/modules:1.2 --- CVSROOT/modules:1.1 Wed May 11 22:19:30 2005 +++ CVSROOT/modules Thu May 12 19:29:24 2005 @@ -24,3 +24,5 @@ # character to interpose another module into the current module. This # can be useful for creating a module that consists of many directories # spread out over the entire source repository. + +html docs/html From mantoniotti at common-lisp.net Thu May 12 17:35:19 2005 From: mantoniotti at common-lisp.net (Marco Antoniotti) Date: Thu, 12 May 2005 19:35:19 +0200 (CEST) Subject: [cl-sbml-cvs] CVS update: CVSROOT/modules Message-ID: <20050512173519.D553C8870E@common-lisp.net> Update of /project/cl-sbml/cvsroot/CVSROOT In directory common-lisp.net:/tmp/cvs-serv5242 Modified Files: modules Log Message: Modules file updated. Date: Thu May 12 19:35:19 2005 Author: mantoniotti Index: CVSROOT/modules diff -u CVSROOT/modules:1.2 CVSROOT/modules:1.3 --- CVSROOT/modules:1.2 Thu May 12 19:29:24 2005 +++ CVSROOT/modules Thu May 12 19:35:19 2005 @@ -25,4 +25,6 @@ # can be useful for creating a module that consists of many directories # spread out over the entire source repository. -html docs/html +html cl-sbml/docs/html + +# end of file -- modules -- From mantoniotti at common-lisp.net Thu May 12 17:42:45 2005 From: mantoniotti at common-lisp.net (Marco Antoniotti) Date: Thu, 12 May 2005 19:42:45 +0200 (CEST) Subject: [cl-sbml-cvs] CVS update: CVSROOT/modules Message-ID: <20050512174245.A77818870E@common-lisp.net> Update of /project/cl-sbml/cvsroot/CVSROOT In directory common-lisp.net:/project/cl-sbml/public_html/CVSROOT Modified Files: modules Log Message: Date: Thu May 12 19:42:45 2005 Author: mantoniotti Index: CVSROOT/modules diff -u CVSROOT/modules:1.3 CVSROOT/modules:1.4 --- CVSROOT/modules:1.3 Thu May 12 19:35:19 2005 +++ CVSROOT/modules Thu May 12 19:42:45 2005 @@ -25,6 +25,6 @@ # can be useful for creating a module that consists of many directories # spread out over the entire source repository. -html cl-sbml/docs/html +html -d public_html cl-sbml/docs/html # end of file -- modules -- From mantoniotti at common-lisp.net Thu May 12 17:52:22 2005 From: mantoniotti at common-lisp.net (Marco Antoniotti) Date: Thu, 12 May 2005 19:52:22 +0200 (CEST) Subject: [cl-sbml-cvs] CVS update: cl-sbml/tests/100Yeast.xml.gz Message-ID: <20050512175222.7A28A8870E@common-lisp.net> Update of /project/cl-sbml/cvsroot/cl-sbml/tests In directory common-lisp.net:/tmp/cvs-serv6214 Added Files: 100Yeast.xml.gz Log Message: Added the (large) 100Yeast.xml.gz test file. Date: Thu May 12 19:52:21 2005 Author: mantoniotti