From root at common-lisp.net Mon Apr 7 06:01:05 2008 From: root at common-lisp.net (root) Date: Mon, 7 Apr 2008 02:01:05 -0400 (EDT) Subject: [Cl-bio-devel] Auto-nag: cl-bio please update your webpage Message-ID: <20080407060105.D17F72E2CB@common-lisp.net> You are being nagged on because you have not created a sensible default webpage for your project. Please do so or you will be nagged again next week. All we ask is that you type in something about the project and perhaps some links to mailinglists etc. See common-lisp.net/project/clo/sp/index.html for a reasonable template. Some projects host their webpages somewhere else (eg. http://common-lisp.net/project/cl-ppcre) and if you're in the same situation you may put the following in your index.shtml: Any questions? You can reach the author of this cronjob at clo-devel at common-lisp.net Thanks! From root at common-lisp.net Mon Apr 14 06:02:45 2008 From: root at common-lisp.net (root) Date: Mon, 14 Apr 2008 02:02:45 -0400 (EDT) Subject: [Cl-bio-devel] Auto-nag: cl-bio please update your webpage Message-ID: <20080414060245.08DA332038@common-lisp.net> You are being nagged on because you have not created a sensible default webpage for your project. Please do so or you will be nagged again next week. All we ask is that you type in something about the project and perhaps some links to mailinglists etc. See common-lisp.net/project/clo/sp/index.html for a reasonable template. Some projects host their webpages somewhere else (eg. http://common-lisp.net/project/cl-ppcre) and if you're in the same situation you may put the following in your index.shtml: Any questions? You can reach the author of this cronjob at clo-devel at common-lisp.net Thanks! From root at common-lisp.net Mon Apr 21 06:03:32 2008 From: root at common-lisp.net (root) Date: Mon, 21 Apr 2008 02:03:32 -0400 (EDT) Subject: [Cl-bio-devel] Auto-nag: cl-bio please update your webpage Message-ID: <20080421060332.7EACF240D8@common-lisp.net> You are being nagged on because you have not created a sensible default webpage for your project. Please do so or you will be nagged again next week. All we ask is that you type in something about the project and perhaps some links to mailinglists etc. See common-lisp.net/project/clo/sp/index.html for a reasonable template. Some projects host their webpages somewhere else (eg. http://common-lisp.net/project/cl-ppcre) and if you're in the same situation you may put the following in your index.shtml: Any questions? You can reach the author of this cronjob at clo-devel at common-lisp.net Thanks! From krewink at inb.uni-luebeck.de Wed Apr 23 09:42:24 2008 From: krewink at inb.uni-luebeck.de (Albert Krewinkel) Date: Wed, 23 Apr 2008 11:42:24 +0200 Subject: [Cl-bio-devel] Project merging Message-ID: <20080423094224.GB20805@inb.uni-luebeck.de> Hello, When I found out about cl-bio a few days ago, I was thrilled to find someone else working on a general common lisp bio package. I started a similar effort some time ago, named CL Computational Biology[1]. It's not in my interest to duplicate any functionality, which is why I'd like to merge the two code bases. My main suggestion is to merge the bio-sequence implementations. During the implementation of CLCB bio-sequences, we focused on the intuitive handling of sub-intervals. The concept applied here is to regard bio-sequences as discrete intervals. That way, other sequences and features can simply be mapped upon their respective 'supersequence', keeping information of e.g. where an amino acid 'came from'. This also allows for set theoretic handling of bio-sequences. The concept is a modification of the modeling used by the Ensembl project[2]. Disregarding your opinion towards the proposed merge, I'd be delighted to help building a community driven Bio project in eather case. Best, Albert [1] No website yet, but some docs in the svn repository: svn co http://clcb.svn.sf.net/svnroot/clcb/trunk clcb [2] http://www.ensembl.org/info/using/api/core/index.html -- Albert Krewinkel University of Luebeck, Institute for Neuro- and Bioinformatics http://www.inb.uni-luebeck.de/~krewink/ -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 189 bytes Desc: Digital signature URL: From root at common-lisp.net Mon Apr 28 06:03:40 2008 From: root at common-lisp.net (root) Date: Mon, 28 Apr 2008 02:03:40 -0400 (EDT) Subject: [Cl-bio-devel] Auto-nag: cl-bio please update your webpage Message-ID: <20080428060340.04AEA71150@common-lisp.net> You are being nagged on because you have not created a sensible default webpage for your project. Please do so or you will be nagged again next week. All we ask is that you type in something about the project and perhaps some links to mailinglists etc. See common-lisp.net/project/clo/sp/index.html for a reasonable template. Some projects host their webpages somewhere else (eg. http://common-lisp.net/project/cl-ppcre) and if you're in the same situation you may put the following in your index.shtml: Any questions? You can reach the author of this cronjob at clo-devel at common-lisp.net Thanks!