[armedbear-devel] integrating abcl into Protege
Timothy Redmond
tredmond at stanford.edu
Wed Mar 10 22:06:00 UTC 2010
On Wed, 2010-03-10 at 22:19 +0100, Alessio Stalla wrote:
> On Wed, Mar 10, 2010 at 9:14 PM, Alan Ruttenberg
> <alanruttenberg at gmail.com> wrote:
> > Protege is an ontology development tool. I'm interested in using abcl
> > to develop plugins and TIm Redmond was kind enough to have a stab at
> > doing a first pass integration, but ran into trouble. I wonder if his
> > report makes rings a bell?
>
> Surely the function/class loading code has changed quite a lot since
> 0.18.1, so I'd advise you to try with abcl from trunk (or wait till
> 0.19 is released). Maybe the problem won't go away, but it's worth
> trying - at least we'll get a stack trace that's more meaningful wrt.
> the current state of affairs.
I included the error on trunk below. The url returned by the class
loader has the wrong format. For some reason this url is being parsed
in the Pathname class and it gets into trouble. I was thinking that it
might be possible for me to make a minimal change to the code somehow to
fix this but I have not yet figured out exactly how to make this change.
-Timothy
java.lang.Error
at org.armedbear.lisp.Primitives$pf_error.execute(Primitives.java:1561)
at org.armedbear.lisp.Primitive.execute(Primitive.java:108)
at org.armedbear.lisp.Symbol.execute(Symbol.java:775)
at org.armedbear.lisp.Lisp.error(Lisp.java:357)
at org.armedbear.lisp.Pathname.<init>(Pathname.java:184)
at org.armedbear.lisp.Site.init(Site.java:59)
at org.armedbear.lisp.Site.getLispHome(Site.java:72)
at org.armedbear.lisp.Site.<clinit>(Site.java:82)
at org.armedbear.lisp.Load.loadSystemFile(Load.java:255)
at org.armedbear.lisp.Interpreter.initializeLisp(Interpreter.java:158)
at org.armedbear.lisp.Interpreter.createInstance(Interpreter.java:69)
at org.sciencecommons.protege.lisp.LispContext.<init>(LispContext.java:14)
at org.sciencecommons.protege.lisp.LispContext.getInstance(LispContext.java:20)
at org.sciencecommons.protege.lisp.Activator.start(Activator.java:13)
at org.apache.felix.framework.util.SecureAction.startActivator(SecureAction.java:639)
at org.apache.felix.framework.Felix.activateBundle(Felix.java:1700)
at org.apache.felix.framework.Felix.startBundle(Felix.java:1622)
at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:915)
at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:902)
at org.protege.editor.core.BundleManager.startPlugins(BundleManager.java:110)
at org.protege.editor.core.BundleManager.loadPlugins(BundleManager.java:41)
at org.protege.editor.core.ProtegeApplication.loadPlugins(ProtegeApplication.java:277)
at org.protege.editor.core.ProtegeApplication.initApplication(ProtegeApplication.java:171)
at org.protege.editor.core.ProtegeApplication.start(ProtegeApplication.java:113)
at org.apache.felix.framework.util.SecureAction.startActivator(SecureAction.java:639)
at org.apache.felix.framework.Felix.activateBundle(Felix.java:1700)
at org.apache.felix.framework.Felix.startBundle(Felix.java:1622)
at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1077)
at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:264)
at java.lang.Thread.run(Thread.java:619)
ERROR placeholder called with arguments:
#<ERROR {1876E5D}>
Unsupported URL: 'bundle://10.0:2/org/armedbear/lisp/boot.lisp'
>
> Alessio
>
> > -Alan
> >
> >
> > ---------- Forwarded message ----------
> > From: Timothy Redmond <tredmond at stanford.edu>
> > Date: Wed, Mar 10, 2010 at 2:12 PM
> > Subject: [POSSIBLE VIRUS:###] Re: further on common lisp integration
> > To: Alan Ruttenberg <alanruttenberg at gmail.com>
> >
> >
> >
> > There is something of a difficulty in using this library. It is doing
> > some funky stuff with urls and class loaders and this doesn't work with
> > Protege. Probably could be made to work by making some changes to the
> > abcl sources. In particular it seems to detect that it is loading
> > through the class loader if the prefix begins with jar which is not a
> > correct assumption in general.
> >
> > But here is a start if you want to debug a bit more.
> >
> > -Timothy
> >
> >
> >
> >
> > java.util.zip.ZipException: error in opening zip file
> > at java.util.zip.ZipFile.open(Native Method)
> > at java.util.zip.ZipFile.<init>(ZipFile.java:114)
> > at java.util.zip.ZipFile.<init>(ZipFile.java:75)
> > at org.armedbear.lisp.ZipCache.getZip(ZipCache.java:54)
> > at org.armedbear.lisp.Lisp.readFunctionBytes(Lisp.java:1305)
> > at org.armedbear.lisp.AutoloadedFunctionProxy$2.execute(AutoloadedFunctionProxy.java:307)
> > at org.armedbear.lisp.LispThread.execute(LispThread.java:562)
> > at org.armedbear.lisp.Lisp.evalCall(Lisp.java:494)
> > at org.armedbear.lisp.Lisp.eval(Lisp.java:459)
> > at org.armedbear.lisp.Lisp.processTagBody(Lisp.java:767)
> > at org.armedbear.lisp.dotimes.execute(dotimes.java:105)
> > at org.armedbear.lisp.Lisp.eval(Lisp.java:449)
> > at org.armedbear.lisp.Load.faslLoadStream(Load.java:628)
> > at org.armedbear.lisp.Load.access$100(Load.java:70)
> > at org.armedbear.lisp.Load$1.execute(Load.java:485)
> > at org.armedbear.lisp.LispThread.execute(LispThread.java:579)
> > at org.armedbear.lisp.Lisp.evalCall(Lisp.java:501)
> > at org.armedbear.lisp.Lisp.eval(Lisp.java:459)
> > at org.armedbear.lisp.Load.loadStream(Load.java:593)
> > at org.armedbear.lisp.Load.loadFileFromStream(Load.java:556)
> > at org.armedbear.lisp.Load.loadFileFromStream(Load.java:499)
> > at org.armedbear.lisp.Load.loadSystemFile(Load.java:415)
> > at org.armedbear.lisp.Load$4.execute(Load.java:774)
> > at org.armedbear.lisp.LispThread.execute(LispThread.java:562)
> > at org.armedbear.lisp.Lisp.evalCall(Lisp.java:494)
> > at org.armedbear.lisp.Lisp.eval(Lisp.java:459)
> > at org.armedbear.lisp.Load.loadStream(Load.java:593)
> > at org.armedbear.lisp.Load.loadFileFromStream(Load.java:556)
> > at org.armedbear.lisp.Load.loadFileFromStream(Load.java:499)
> > at org.armedbear.lisp.Load.loadSystemFile(Load.java:415)
> > at org.armedbear.lisp.Interpreter.initializeLisp(Interpreter.java:158)
> > at org.armedbear.lisp.Interpreter.createInstance(Interpreter.java:69)
> > at org.sciencecommons.protege.lisp.LispContext.<init>(LispContext.java:14)
> > at org.sciencecommons.protege.lisp.LispContext.getInstance(LispContext.java:20)
> > at org.sciencecommons.protege.lisp.Activator.start(Activator.java:13)
> > at org.apache.felix.framework.util.SecureAction.startActivator(SecureAction.java:639)
> > at org.apache.felix.framework.Felix.activateBundle(Felix.java:1700)
> > at org.apache.felix.framework.Felix.startBundle(Felix.java:1622)
> > at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:915)
> > at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:902)
> > at org.protege.editor.core.BundleManager.startPlugins(BundleManager.java:110)
> > at org.protege.editor.core.BundleManager.loadPlugins(BundleManager.java:41)
> > at org.protege.editor.core.ProtegeApplication.loadPlugins(ProtegeApplication.java:277)
> > at org.protege.editor.core.ProtegeApplication.initApplication(ProtegeApplication.java:171)
> > at org.protege.editor.core.ProtegeApplication.start(ProtegeApplication.java:113)
> > at org.apache.felix.framework.util.SecureAction.startActivator(SecureAction.java:639)
> > at org.apache.felix.framework.Felix.activateBundle(Felix.java:1700)
> > at org.apache.felix.framework.Felix.startBundle(Felix.java:1622)
> > at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1077)
> > at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:264)
> > at java.lang.Thread.run(Thread.java:619)
> > java.lang.Error
> > at org.armedbear.lisp.Primitives$70.execute(Primitives.java:1462)
> > at org.armedbear.lisp.Primitive.execute(Primitive.java:108)
> > at org.armedbear.lisp.Symbol.execute(Symbol.java:770)
> > at org.armedbear.lisp.Lisp.error(Lisp.java:354)
> > at org.armedbear.lisp.Lisp.readFunctionBytes(Lisp.java:1329)
> > at org.armedbear.lisp.AutoloadedFunctionProxy$2.execute(AutoloadedFunctionProxy.java:307)
> > at org.armedbear.lisp.LispThread.execute(LispThread.java:562)
> > at org.armedbear.lisp.Lisp.evalCall(Lisp.java:494)
> > at org.armedbear.lisp.Lisp.eval(Lisp.java:459)
> > at org.armedbear.lisp.Lisp.processTagBody(Lisp.java:767)
> > at org.armedbear.lisp.dotimes.execute(dotimes.java:105)
> > at org.armedbear.lisp.Lisp.eval(Lisp.java:449)
> > at org.armedbear.lisp.Load.faslLoadStream(Load.java:628)
> > at org.armedbear.lisp.Load.access$100(Load.java:70)
> > at org.armedbear.lisp.Load$1.execute(Load.java:485)
> > at org.armedbear.lisp.LispThread.execute(LispThread.java:579)
> > at org.armedbear.lisp.Lisp.evalCall(Lisp.java:501)
> > at org.armedbear.lisp.Lisp.eval(Lisp.java:459)
> > at org.armedbear.lisp.Load.loadStream(Load.java:593)
> > at org.armedbear.lisp.Load.loadFileFromStream(Load.java:556)
> > at org.armedbear.lisp.Load.loadFileFromStream(Load.java:499)
> > at org.armedbear.lisp.Load.loadSystemFile(Load.java:415)
> > at org.armedbear.lisp.Load$4.execute(Load.java:774)
> > at org.armedbear.lisp.LispThread.execute(LispThread.java:562)
> > at org.armedbear.lisp.Lisp.evalCall(Lisp.java:494)
> > at org.armedbear.lisp.Lisp.eval(Lisp.java:459)
> > at org.armedbear.lisp.Load.loadStream(Load.java:593)
> > at org.armedbear.lisp.Load.loadFileFromStream(Load.java:556)
> > at org.armedbear.lisp.Load.loadFileFromStream(Load.java:499)
> > at org.armedbear.lisp.Load.loadSystemFile(Load.java:415)
> > at org.armedbear.lisp.Interpreter.initializeLisp(Interpreter.java:158)
> > at org.armedbear.lisp.Interpreter.createInstance(Interpreter.java:69)
> > at org.sciencecommons.protege.lisp.LispContext.<init>(LispContext.java:14)
> > at org.sciencecommons.protege.lisp.LispContext.getInstance(LispContext.java:20)
> > at org.sciencecommons.protege.lisp.Activator.start(Activator.java:13)
> > at org.apache.felix.framework.util.SecureAction.startActivator(SecureAction.java:639)
> > at org.apache.felix.framework.Felix.activateBundle(Felix.java:1700)
> > at org.apache.felix.framework.Felix.startBundle(Felix.java:1622)
> > at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:915)
> > at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:902)
> > at org.protege.editor.core.BundleManager.startPlugins(BundleManager.java:110)
> > at org.protege.editor.core.BundleManager.loadPlugins(BundleManager.java:41)
> > at org.protege.editor.core.ProtegeApplication.loadPlugins(ProtegeApplication.java:277)
> > at org.protege.editor.core.ProtegeApplication.initApplication(ProtegeApplication.java:171)
> > at org.protege.editor.core.ProtegeApplication.start(ProtegeApplication.java:113)
> > at org.apache.felix.framework.util.SecureAction.startActivator(SecureAction.java:639)
> > at org.apache.felix.framework.Felix.activateBundle(Felix.java:1700)
> > at org.apache.felix.framework.Felix.startBundle(Felix.java:1622)
> > at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1077)
> > at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:264)
> > at java.lang.Thread.run(Thread.java:619)
> >
> > _______________________________________________
> > armedbear-devel mailing list
> > armedbear-devel at common-lisp.net
> > http://common-lisp.net/cgi-bin/mailman/listinfo/armedbear-devel
> >
> >
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